5UWK

Matrix metalloproteinase-13 complexed with selective inhibitor compound (S)-10a


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.148

Literature

Macromolecules
Sequence Display for 5UWK

Classification: hydrolase / hydrolase inhibitor

Total Structure Weight: 40262.52

Macromolecule Entities
Molecule Chains Length Organism Details
Collagenase 3 A, B 172 Homo sapiens EC#: 3.4.24 IUBMB
Details: CATALYTIC DOMAIN (UNP RESIDUES 104-274)
Gene Name(s): MMP13 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
8OM
Query on 8OM

A, B (S)-3-methyl-2-(4'-(((4-oxo-4,5,6,7-tetrahydro- 3H-cyclopenta[d]pyrimidin-2-yl)thio)methyl)- [1,1'-biphenyl]-4-ylsulfonamido)butanoic acid
C25 H27 N3 O5 S2
GPMDDUDPGNYEJM-QFIPXVFZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.148
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.78 α = 90.00
b = 57.15 β = 90.00
c = 120.56 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-02-21
  • Released Date: 2017-07-12
  • Deposition author(s): Taylor, A.B., Cao, X., Hart, P.J.

Revision History

  • 2017-07-26
    Type: Database references