5O35

Structure of complement proteins complex

• PDB DOI: https://doi.org/10.2210/pdb5O35/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2017-05-23 Released: 2017-06-28 
• Deposition Author(s): Xue, X., Wu, J., Forneris, F., Gros, P.
• Funding Organization(s): National Institutes of Health, NWO, European Research Council

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 4.20 Å
• R-Value Free: 0.246 
• R-Value Work: 0.216 
• R-Value Observed: 0.217 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 218.69 kDa 
• Atom Count: 15,181 
• Modelled Residue Count: 1,921 
• Deposited Residue Count: 1,943 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Complement C3	A	645	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P01024 (Homo sapiens) Explore P01024  Go to UniProtKB:  P01024
PHAROS:  P01024 GTEx:  ENSG00000125730

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Complement C3	B	915	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P01024 (Homo sapiens) Explore P01024  Go to UniProtKB:  P01024
PHAROS:  P01024 GTEx:  ENSG00000125730

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Complement factor H,Complement factor H	C	383	Homo sapiens	Mutation(s): 0  Gene Names: CFH, HF, HF1, HF2
UniProt & NIH Common Fund Data Resources
Find proteins for P08603 (Homo sapiens) Explore P08603  Go to UniProtKB:  P08603
PHAROS:  P08603 GTEx:  ENSG00000000971

Oligosaccharides

Help

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	D	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 4.20 Å
• R-Value Free: 0.246 
• R-Value Work: 0.216 
• R-Value Observed: 0.217 
• Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 142.9	α = 90
b = 142.9	β = 90
c = 312.721	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-06-28 
Deposition Author(s): Xue, X., Wu, J., Forneris, F., Gros, P.

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Funding Organization	Location	Grant Number
National Institutes of Health	United States	R01AI030040-16
NWO	Netherlands	Spinoza 01.80.104.00
European Research Council	Netherlands	AdG 233229

Revision History  

• Version 1.0: 2017-06-28
  Type: Initial release
  
• Version 1.1: 2017-07-12
  Changes: Database references
• Version 1.2: 2017-08-16
  Changes: Database references
• Version 1.3: 2018-01-31
  Changes: Author supporting evidence
• Version 1.4: 2019-10-16
  Changes: Data collection
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Atomic model, Data collection, Derived calculations, Structure summary