Macromolecules
Sequence Display for 5K77

Classification: HYDROLASE / RNA

Total Structure Weight: 223129.66


Macromolecule Entities
Molecule Chains Length Organism Details
RNA lariat debranching enzyme, putative A, B, C, D, E 360 Entamoeba histolytica Mutation: H91A
Gene Name(s): EHI_062730
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
branch 1 of branched RNA 5'-UAA(-2'GU)CA-3' V, W, X, Y, Z 5 Saccharomyces cerevisiae This is a 2' branched RNA 5'-UAA(-2'GU)CA-3'
brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' v, w, x, y, z 2 Saccharomyces cerevisiae This is a 2' branched RNA 5'-UAA(-2'GU)CA-3'

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D, E ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A, B, C, D, E FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OH
Query on OH

A, B, C, D, E HYDROXIDE ION
H O
XLYOFNOQVPJJNP-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.182
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 73.15 α = 90.00
b = 141.89 β = 90.00
c = 212.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-25
  • Released Date: 2016-12-07
  • Deposition author(s): Clark, N.E., Taylor, A.B., Hart, P.J.

Revision History

No revisions since initial release