5JH5

Structural Basis for the Hierarchical Assembly of the Core of PRC1.1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 5JH5

Classification: METAL BINDING PROTEIN / TRANSCRIPTION

Total Structure Weight: 78554.55

Macromolecule Entities
Molecule Chains Length Organism Details
Lysine-specific demethylase 2B A 281 Homo sapiens EC#: 1.14.11.27 IUBMB
Fragment: RESIDUES 1059-1336
Gene Name(s): KDM2B Gene View CXXC2 FBL10 FBXL10 JHDM1B PCCX2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
S-phase kinase-associated protein 1 B 162 Homo sapiens Fragment: Residues 2-163
Gene Name(s): SKP1 Gene View EMC19 OCP2 SKP1A TCEB1L
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Polycomb group RING finger protein 1 C 109 Homo sapiens Fragment: RESIDUES 150-255
Gene Name(s): PCGF1 Gene View NSPC1 RNF68
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BCL-6 corepressor-like protein 1 D 122 Homo sapiens Fragment: RESIDUES 1594-1711
Gene Name(s): BCORL1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.206
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.05 α = 90.00
b = 73.80 β = 90.00
c = 123.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-20
  • Released Date: 2016-09-14
  • Deposition author(s): Wong, S.J., Taylor, A.B., Hart, P.J., Kim, C.A.

Revision History

  • 2016-10-19
    Type: Database references