5HF9
Crystal structure of human acetylcholinesterase in complex with paraoxon and HI6
- PDB DOI: https://doi.org/10.2210/pdb5HF9/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2016-01-06 Released: 2016-06-22 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.240 
- R-Value Work: 0.201 
- R-Value Observed: 0.203 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Acetylcholinesterase | 542 | Homo sapiens | Mutation(s): 0  Gene Names: ACHE EC: 3.1.1.7 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P22303 (Homo sapiens) Explore P22303  Go to UniProtKB:  P22303 | |||||
PHAROS:  P22303 GTEx:  ENSG00000087085  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P22303 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 6 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PE8 Query on PE8 | K [auth B] | 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL C16 H34 O9 GLZWNFNQMJAZGY-UHFFFAOYSA-N | |||
HI6 Query on HI6 | H [auth A], O [auth B] | 4-(AMINOCARBONYL)-1-[({2-[(E)-(HYDROXYIMINO)METHYL]PYRIDINIUM-1-YL}METHOXY)METHYL]PYRIDINIUM C14 H16 N4 O3 FJZDLOMCEPUCII-UHFFFAOYSA-P | |||
NAG Query on NAG | I [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
DEP Query on DEP | E [auth A], J [auth B] | DIETHYL PHOSPHONATE C4 H11 O3 P MJUJXFBTEFXVKU-UHFFFAOYSA-N | |||
EDO Query on EDO | F [auth A], G [auth A], L [auth B], M [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
NO3 Query on NO3 | N [auth B] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.240 
- R-Value Work: 0.201 
- R-Value Observed: 0.203 
- Space Group: P 31 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 105.931 | α = 90 |
b = 105.931 | β = 90 |
c = 324.415 | γ = 120 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
SCALEPACK | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2016-06-22  Deposition Author(s): Franklin, M.F., Rudolph, M.J., Ginter, C., Cassidy, M.S., Cheung, J.
Revision History (Full details and data files)
- Version 1.0: 2016-06-22
Type: Initial release - Version 1.1: 2016-08-24
Changes: Database references - Version 1.2: 2017-11-22
Changes: Database references, Derived calculations, Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary