5FR2
Farnesylated RhoA-GDP in complex with RhoGDI-alpha, lysine acetylated at K178
- PDB DOI: https://doi.org/10.2210/pdb5FR2/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens, Bos taurus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-12-15 Released: 2016-01-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.35 Å
- R-Value Free: 0.258
- R-Value Work: 0.236
- R-Value Observed: 0.237
This is version 1.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| TRANSFORMING PROTEIN RHOA | 195 | Homo sapiens | Mutation(s): 0 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61586 (Homo sapiens) Explore P61586 Go to UniProtKB: P61586 | |||||
PHAROS: P61586 GTEx: ENSG00000067560 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61586 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RHO GDP-DISSOCIATION INHIBITOR 1 | 213 | Bos taurus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P19803 (Bos taurus) Explore P19803 Go to UniProtKB: P19803 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P19803 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP Query on GDP | D [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
| FAR Query on FAR | C [auth A] | FARNESYL C15 H26 JXBSHSBNOVLGHF-BUJBXKITSA-N |  | ||
| BGC Query on BGC | F [auth B] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N |  | ||
| MG Query on MG | E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| ALY Query on ALY | B | L-PEPTIDE LINKING | C8 H16 N2 O3 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.35 Å
- R-Value Free: 0.258
- R-Value Work: 0.236
- R-Value Observed: 0.237
- Space Group: P 62
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 176.979 | α = 90 |
| b = 176.979 | β = 90 |
| c = 63.896 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MOSFLM | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-01-13 Deposition Author(s): Kuhlmann, N., Wroblowski, S., Knyphausen, P., de Boor, S., Brenig, J., Zienert, A.Y., Meyer-Teschendorf, K., Praefcke, G.J.K., Nolte, H., Krueger, M., Schacherl, M., Baumann, U., James, L.C., Chin, J.W., Lammers, M.
Revision History (Full details and data files)
- Version 1.0: 2016-01-13
Type: Initial release - Version 1.1: 2016-01-27
Changes: Database references - Version 1.2: 2016-03-23
Changes: Database references - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary - Version 1.4: 2024-01-10
Changes: Data collection, Database references, Refinement description, Structure summary
