5DOH

Crystal structure of human carbonic anhydrase isozyme II with 2-[(1S)-2,3-Dihydro-1H-inden-1-ylamino]-3,5,6-trifluoro-4-[(2-hydroxyethyl)thio]benzenesulfonamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.144

Literature

Macromolecules
Sequence Display for 5DOH

Classification: LYASE

Total Structure Weight: 60028.46

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 2 A, B 260 Homo sapiens EC#: 4.2.1.1 IUBMB
Fragment: human carbonic anhydrase II
Gene Name(s): CA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5DU
Query on 5DU

A, B 2-[(1S)-2,3-dihydro-1H-inden-1-ylamino]-3,5,6- trifluoro-4-[(2-hydroxyethyl)sulfanyl]benzenesulfonamide
C17 H17 F3 N2 O3 S2
HYCVHVOZJGSFTR-NSHDSACASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BCN
Query on BCN

A, B BICINE
C6 H13 N O4
FSVCELGFZIQNCK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A, B DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.144
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 42.16 α = 90.00
b = 41.16 β = 104.19
c = 71.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-11
  • Released Date: 2016-09-28
  • Deposition author(s): Smirnov, A., Manakova, E., Grazulis, S.

Revision History

  • Version 1_0: 2016-09-28

    Type: Initial release

  • Version 1_1: 2017-01-18

    Type: Database references

  • Version 1_2: 2017-02-01

    Type: Database references