4YHG
NATIVE BACTEROIDETES-AFFILIATED GH5 CELLULASE LINKED WITH A POLYSACCHARIDE UTILIZATION LOCUS
- PDB DOI: https://doi.org/10.2210/pdb4YHG/pdb
- Classification: HYDROLASE
- Organism(s): Bacteroidetes bacterium AC2a
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes 
- Deposited: 2015-02-27 Released: 2015-07-15 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.228 
- R-Value Work: 0.185 
- R-Value Observed: 0.187 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
GH5 | 389 | Bacteroidetes bacterium AC2a | Mutation(s): 1  EC: 3.2.1.4 | ||
UniProt | |||||
Find proteins for A0A076MPD7 (Bacteroidetes bacterium AC2a) Explore A0A076MPD7  Go to UniProtKB:  A0A076MPD7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A076MPD7 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900021 Query on PRD_900021 | C | beta-cellotriose | Oligosaccharide / Metabolism |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.228 
- R-Value Work: 0.185 
- R-Value Observed: 0.187 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 84.326 | α = 90 |
b = 99.553 | β = 90 |
c = 102.462 | γ = 90 |
Software Name | Purpose |
---|---|
SCALA | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2015-07-15  Deposition Author(s): Naas, A.E., MacKenzie, A.K., Dalhus, B., Eijsink, V.G.H., Pope, P.B.
Revision History (Full details and data files)
- Version 1.0: 2015-07-15
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2024-01-10
Changes: Data collection, Database references, Refinement description, Structure summary