4Q6D

Crystal structure of human carbonic anhydrase isozyme II with 4-[(Z)-azepan-1-yldiazenyl]benzenesulfonamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.12 Å
  • R-Value Free: 0.154
  • R-Value Work: 0.128

Literature

Macromolecules
Sequence Display for 4Q6D

Classification: LYASE / LYASE INHIBITOR

Total Structure Weight: 29878.14

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonic anhydrase 2 A 260 Homo sapiens EC#: 4.2.1.1 IUBMB
Gene Name(s): CA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
WW3
Query on WW3

A 4-[(E)-azepan-1-yldiazenyl]benzenesulfonamide
C12 H18 N4 O2 S
CIAKXEZVKQYCME-CCEZHUSRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BCN
Query on BCN

A BICINE
C6 H13 N O4
FSVCELGFZIQNCK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
WW3 N/A in BindingDB
Kd: 43.5 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.12 Å
  • R-Value Free: 0.154
  • R-Value Work: 0.128
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 42.13 α = 90.00
b = 41.19 β = 104.19
c = 71.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-22
  • Released Date: 2014-11-26
  • Deposition author(s): Smirnov, A., Manakova, E., Grazulis, S.

Revision History

No revisions since initial release