4K0Y

Structure of PIM-1 kinase bound to N-(4-fluorophenyl)-7-hydroxy-5-(piperidin-4-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 4K0Y

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 32055.21

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 274 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: kinase domain (UNP residues 124-397)
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1OA
Query on 1OA

A N-(4-fluorophenyl)-7-hydroxy-5-(piperidin- 4-yl)pyrazolo[1,5-a]pyrimidine-3-carboxamide
C18 H18 F N5 O2
SBDJADVTLNKDBC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1OA N/A in BindingDB
Ki: 15 nM  BindingMOAD
Ki: 15 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.175
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 96.83 α = 90.00
b = 96.83 β = 90.00
c = 80.72 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-04
  • Released Date: 2013-05-15
  • Deposition author(s): Murray, J.M., Wallweber, H., Steffek, M.

Revision History

  • 2013-05-22
    Type: Database references