4DTK

Novel and selective pan-PIM kinase inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 4DTK

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 32893.27

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase pim-1 A 276 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: Kinase domain
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
7LI
Query on 7LI

A (5Z)-5-{2-[(3R)-3-aminopiperidin-1-yl]-3- (propan-2-yloxy)benzylidene}-1,3-thiazolidine- 2,4-dione
C18 H23 N3 O3 S
ULMRMVZQMKZWKJ-MLJKTZRHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
7LI N/A in BindingDB
IC50: 4 nM  BindingMOAD
IC50: 3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.165
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.44 α = 90.00
b = 97.44 β = 90.00
c = 81.36 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-21
  • Released Date: 2012-07-11
  • Deposition author(s): Ferguson, A.D.

Revision History

  • Version 1_0: 2012-07-11

    Type: Initial release

  • Version 1_1: 2012-07-25

    Type: Database references