4B3N

Crystal structure of rhesus TRIM5alpha PRY/SPRY domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 4B3N

Classification: SUGAR BINDING PROTEIN / LIGASE

Total Structure Weight: 135613.61

Macromolecule Entities
Molecule Chains Length Organism Details
MALTOSE-BINDING PERIPLASMIC PROTEIN, TRIPARTITE MOTIF-CONTAINING PROTEIN 5 A, B 602 Escherichia coli Macaca mulatta EC#: 6.3.2 IUBMB
Fragment: MBP RESIDUES 27-395, TRIM5ALPHA PRY/SPRY DOMAIN RESIDUES 275-493
Mutation: P1307T, N267D
Gene Name(s): malE b4034 JW3994 TRIM5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MAL
Query on MAL

A, B MALTOSE
C12 H22 O11
GUBGYTABKSRVRQ-ASMJPISFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

A, B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.208
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 170.84 α = 90.00
b = 98.73 β = 122.99
c = 110.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-25
  • Released Date: 2012-10-24
  • Deposition author(s): Yang, H., Ji, X., Zhao, Q., Xiong, Y.

Revision History

  • Version 1_0: 2012-10-24

    Type: Initial release

  • Version 1_1: 2012-10-31

    Type: Database references

  • Version 1_2: 2012-11-28

    Type: Database references

  • Version 1_3: 2017-03-15

    Type: Source and taxonomy