4UIP

The complex structure of extracellular domain of EGFR with Repebody (rAC1).

• PDB DOI: https://doi.org/10.2210/pdb4UIP/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens, Listeria monocytogenes, synthetic construct, Eptatretus burgeri
• Expression System: Spodoptera frugiperda, Escherichia coli
• Mutation(s): No 


• Deposited: 2015-03-31 Released: 2015-11-25 
• Deposition Author(s): Kang, Y.J., Cha, Y.J., Cho, H.S., Lee, J.J., Kim, H.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.95 Å
• R-Value Free: 0.297 
• R-Value Work: 0.237 
• R-Value Observed: 0.240 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 97.76 kDa 
• Atom Count: 6,680 
• Modelled Residue Count: 850 
• Deposited Residue Count: 869 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
EPIDERMAL GROWTH FACTOR RECEPTOR	A	618	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P00533 (Homo sapiens) Explore P00533  Go to UniProtKB:  P00533
PHAROS:  P00533 GTEx:  ENSG00000146648

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
REPEBODY (RAC1)	B	251	Listeria monocytogenes, synthetic construct, Eptatretus burgeri This entity is chimeric	Mutation(s): 0
UniProt
Find proteins for Q4G1L3 (Eptatretus burgeri) Explore Q4G1L3  Go to UniProtKB:  Q4G1L3
Find proteins for E0ACT6 (Listeria monocytogenes) Explore E0ACT6  Go to UniProtKB:  E0ACT6
UniProt Groups	E0ACT6Q4G1L3

Oligosaccharides

Help

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	C	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	D [auth A], E [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.95 Å
• R-Value Free: 0.297 
• R-Value Work: 0.237 
• R-Value Observed: 0.240 
• Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.79	α = 90
b = 88.34	β = 90
c = 189.21	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-11-25 
Deposition Author(s): Kang, Y.J., Cha, Y.J., Cho, H.S., Lee, J.J., Kim, H.S.

Revision History  

• Version 1.0: 2015-11-25
  Type: Initial release
  
• Version 1.1: 2015-12-23
  Changes: Structure summary
• Version 1.2: 2017-03-15
  Changes: Source and taxonomy
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary
• Version 2.1: 2024-01-10
  Changes: Data collection, Database references, Refinement description, Structure summary