Download MendeleyHuman Fyn-SH2 domain in complex with a synthetic high-affinity phospho-peptide
Garcia-Pino, A., Huculeci, R., Lenaerts, T., van Nuland, N.A.J.To be published.
4U1P
Human Fyn-SH2 domain in complex with a synthetic high-affinity phospho-peptide
- PDB DOI: https://doi.org/10.2210/pdb4U1P/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens, Alphapolyomavirus mauratus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-07-16 Released: 2015-07-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.188
- R-Value Work: 0.151
- R-Value Observed: 0.153
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tyrosine-protein kinase Fyn | 122 | Homo sapiens | Mutation(s): 0 Gene Names: FYN EC: 2.7.10.2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06241 (Homo sapiens) Explore P06241 Go to UniProtKB: P06241 | |||||
PHAROS: P06241 GTEx: ENSG00000010810 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P06241 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Middle T antigen | 11 | Alphapolyomavirus mauratus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P03079 (Hamster polyomavirus) Explore P03079 Go to UniProtKB: P03079 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P03079 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 15P Query on 15P | C [auth A] | POLYETHYLENE GLYCOL (N=34) C69 H140 O35 VUYXVWGKCKTUMF-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| PTR Query on PTR | B | L-PEPTIDE LINKING | C9 H12 N O6 P |  | TYR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.188
- R-Value Work: 0.151
- R-Value Observed: 0.153
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 39.248 | α = 90 |
| b = 39.248 | β = 90 |
| c = 145.199 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2015-07-29 Deposition Author(s): Garcia-Pino, A., Huculeci, R., Lenaerts, T., van Nuland, N.A.J.
Revision History (Full details and data files)
- Version 1.0: 2015-07-29
Type: Initial release - Version 1.1: 2018-02-07
Changes: Database references, Source and taxonomy - Version 1.2: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Refinement description
