4PDY

Crystal structure of aminoglycoside phosphotransferase from Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.174
  • R-Value Work: 0.131

Literature

Macromolecules
Sequence Display for 4PDY

Classification: TRANSFERASE

Total Structure Weight: 41270.80

Macromolecule Entities
Molecule Chains Length Organism Details
Aminoglycoside phosphotransferase A 351 Alicyclobacillus acidocaldarius Gene Name(s): Aaci_0449
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HIS
Query on HIS

A HISTIDINE
C6 H10 N3 O2
HNDVDQJCIGZPNO-YFKPBYRVSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SCN
Query on SCN

A THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.174
  • R-Value Work: 0.131
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 37.52 α = 90.00
b = 51.96 β = 90.00
c = 145.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-22
  • Released Date: 2014-05-07
  • Deposition author(s): Chang, C., Li, H., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2014-05-07

    Type: Initial release

  • Version 1_1: 2015-02-04

    Type: Derived calculations