4OZF
JR5.1 protein complex
- PDB DOI: https://doi.org/10.2210/pdb4OZF/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens, Triticum aestivum
- Expression System: Trichoplusia ni, Escherichia coli BL21
- Mutation(s): No 
- Deposited: 2014-02-15 Released: 2014-04-16 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.238 
- R-Value Work: 0.184 
- R-Value Observed: 0.186 
This is version 1.6 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
HLA class II histocompatibility antigen, DQ alpha 1 chain | 191 | Homo sapiens | Mutation(s): 0  Gene Names: HLA-DQA1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01909 (Homo sapiens) Explore P01909  Go to UniProtKB:  P01909 | |||||
PHAROS:  P01909 GTEx:  ENSG00000196735  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01909 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
HLA class II histocompatibility antigen, DQ beta 1 chain | 213 | Homo sapiens | Mutation(s): 0  Gene Names: HLA-DQB1 | ||
UniProt | |||||
Find proteins for Q5Y7D3 (Homo sapiens) Explore Q5Y7D3  Go to UniProtKB:  Q5Y7D3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5Y7D3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
T-CELL RECEPTOR, JR5.1 ALPHA CHAIN | C [auth G] | 202 | Homo sapiens | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q2YD82 (Homo sapiens) Explore Q2YD82  Go to UniProtKB:  Q2YD82 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2YD82 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
T-CELL RECEPTOR, JR5.1 BETA CHAIN | D [auth H] | 244 | Homo sapiens | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P01850 (Homo sapiens) Explore P01850  Go to UniProtKB:  P01850 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01850 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 5 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
deamidated Gliadin-alpha2 peptide | E [auth J] | 13 | Triticum aestivum | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P04722 (Triticum aestivum) Explore P04722  Go to UniProtKB:  P04722 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04722 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth A], G [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.238 
- R-Value Work: 0.184 
- R-Value Observed: 0.186 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 130.93 | α = 90 |
b = 84.84 | β = 92.99 |
c = 109.68 | γ = 90 |
Software Name | Purpose |
---|---|
BUSTER | refinement |
Entry History 
Deposition Data
- Released Date: 2014-04-16  Deposition Author(s): Petersen, J., Reid, H.H., Rossjohn, J.
Revision History (Full details and data files)
- Version 1.0: 2014-04-16
Type: Initial release - Version 1.1: 2014-05-28
Changes: Data collection - Version 1.2: 2014-12-24
Changes: Database references - Version 1.3: 2015-02-04
Changes: Derived calculations - Version 1.4: 2015-04-22
Changes: Database references - Version 1.5: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary - Version 1.6: 2023-12-27
Changes: Data collection, Database references, Structure summary