4OVK

Crystal structure of periplasmic solute binding protein from Veillonella parvula DSM 2008


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.140

Literature

Macromolecules
Sequence Display for 4OVK

Classification: SOLUTE-BINDING PROTEIN

Total Structure Weight: 39187.06

Macromolecule Entities
Molecule Chains Length Organism Details
Periplasmic binding protein A 341 Veillonella parvula Gene Name(s): Vpar_0328
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

A TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.140
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.15 α = 90.00
b = 58.87 β = 90.00
c = 113.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-11-15
  • Released Date: 2013-12-18
  • Deposition author(s): Chang, C., Chhor, G., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2013-12-18

    Type: Initial release

  • Version 1_1: 2013-12-25

    Type: Data collection

  • Version 1_2: 2014-01-22

    Type: Structure summary

  • Version 1_3: 2015-02-04

    Type: Derived calculations

  • Version 1_4: 2015-02-11

    Type: Source and taxonomy

  • Version 1_5: 2017-09-27

    Type: Database references, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary