4L3A

Crystal structure of Internalin K (InlK) from Listeria monocytogenes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 4L3A

Classification: CELL INVASION

Total Structure Weight: 129442.44

Macromolecule Entities
Molecule Chains Length Organism Details
Internalin K A, B 590 Listeria monocytogenes Fragment: UNP residues 27-568
Gene Name(s): lmo1290
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.228
  • Space Group: P 32 1 2

Unit Cell:

Length (Å) Angle (°)
a = 115.34 α = 90.00
b = 115.34 β = 90.00
c = 190.71 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-05
  • Released Date: 2013-08-28
  • Deposition author(s): Neves, D.

Revision History

  • Version 1_0: 2013-08-28

    Type: Initial release

  • Version 1_1: 2013-09-04

    Type: Database references

  • Version 1_2: 2013-11-13

    Type: Database references