4HK1

Crystal Structure of PCNA from Drosophila melanogaster


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.231 

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This is version 1.1 of the entry. See complete history


Literature

Structure of PCNA from Drosophila melanogaster.

Wang, K.Shi, Z.Zhang, M.Cheng, D.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 387-392

  • DOI: https://doi.org/10.1107/S1744309113004971
  • Primary Citation of Related Structures:  
    4HK1

  • PubMed Abstract: 

    Proliferating cell nuclear antigen (PCNA) plays essential roles in DNA replication, DNA repair, cell-cycle regulation and chromatin metabolism. The PCNA from Drosophila melanogaster (DmPCNA) was purified and crystallized. The crystal of DmPCNA diffracted to 2.0 Å resolution and belonged to space group H3, with unit-cell parameters a = b = 151.16, c = 38.28 Å. The structure of DmPCNA was determined by molecular replacement. DmPCNA forms a symmetric homotrimer in a head-to-tail manner. An interdomain connector loop (IDCL) links the N- and C-terminal domains. Additionally, the N-terminal and C-terminal domains contact each other through hydrophobic associations. Compared with human PCNA, the IDCL of DmPCNA has conformational changes, which may explain their difference in function. This work provides a structural basis for further functional and evolutionary studies of PCNA.


  • Organizational Affiliation

    Department of Biology, Qingdao University, Qingdao, Shandong 266021, People's Republic of China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Proliferating cell nuclear antigen263Drosophila melanogasterMutation(s): 0 
Gene Names: mus209PCNACG9193
UniProt
Find proteins for P17917 (Drosophila melanogaster)
Explore P17917 
Go to UniProtKB:  P17917
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17917
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.231 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 151.157α = 90
b = 151.157β = 90
c = 38.282γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-04-10
    Type: Initial release
  • Version 1.1: 2023-09-20
    Changes: Data collection, Database references, Refinement description