4HES

Structure of a Beta-Lactamase Class A-like Protein from Veillonella parvula.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.137

Literature

Macromolecules
Sequence Display for 4HES

Classification: HYDROLASE

Total Structure Weight: 161306.92

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-lactamase class A-like protein A, B, C, D, E 275 Veillonella parvula Gene Name(s): Vpar_0488
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C, D, E GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A, B, C, D, E FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, D, E SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.160
  • R-Value Work: 0.137
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 117.40 α = 90.00
b = 163.11 β = 90.38
c = 113.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-04
  • Released Date: 2012-10-17
  • Deposition author(s): Cuff, M.E., Li, H., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2012-10-17

    Type: Initial release

  • Version 1_1: 2017-11-15

    Type: Refinement description