3ULI

Human Cyclin Dependent Kinase 2 (CDK2) bound to azabenzimidazole derivative


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 3ULI

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 34449.86

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1N3
Query on 1N3

A 1-(aminomethyl)-N-(3-{[6-bromo-2-(4-methoxyphenyl)- 3H-imidazo[4,5-b]pyridin-7-yl]amino}propyl)cyclopropanecarboxamide
C21 H25 Br N6 O2
XUELBKVSGYWSKD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1N3 N/A in BindingDB
IC50: 70 nM  BindingMOAD
IC50: 70 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.234
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.30 α = 90.00
b = 71.35 β = 90.00
c = 71.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-10
  • Released Date: 2013-08-14
  • Deposition author(s): Larsen, N.A., Tucker, J.A., Wang, T.

Revision History

  • Version 1_0: 2013-08-14

    Type: Initial release

  • Version 1_1: 2013-09-04

    Type: Database references