3R02

The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.167

Literature

Macromolecules
Sequence Display for 3R02

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35041.56

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase pim-1 A 299 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UNM
Query on UNM

A 7-[(cis-4-aminocyclohexyl)amino]-5-bromo- 1-benzofuran-2-carboxylic acid
C15 H17 Br N2 O3
BLBAWGODFTZAEY-PHIMTYICSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMD
Query on IMD

A IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
UNM IC50: 1 nM (100) BindingDB

IC50: 1 nM  BindingMOAD
IC50: 1 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.167
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.17 α = 90.00
b = 97.17 β = 90.00
c = 81.19 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-07
  • Released Date: 2011-05-11
  • Deposition author(s): Xiang, Y., Hirth, B., Asmussen, G., Biemann, H.-P., Good, A., Fitzgerald, M., Gladysheva, T., Jancsics, K., Liu, J., Metz, M., Papoulis, A., Skerlj, R., Stepp, D.J., Wei, R.R.

Revision History

  • 2011-07-13
    Type: Version format compliance