3R01

The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 3R01

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 34890.33

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase pim-1 A 299 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UNE
Query on UNE

A 5-bromo-7-methoxy-1-benzofuran-2-carboxylic acid
C10 H7 Br O4
OEICZFFUNDGUEF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMD
Query on IMD

A IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
UNE IC50: 5800 - 6000 nM (100) BindingDB

N/A in BindingMoad
IC50: 5800 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.287
  • R-Value Work: 0.215
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.94 α = 90.00
b = 97.94 β = 90.00
c = 80.75 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-07
  • Released Date: 2011-05-11
  • Deposition author(s): Liu, J.

Revision History

  • 2011-07-13
    Type: Version format compliance