3R00

The discovery of novel benzofuran-2-carboxylic acids as potent Pim-1 inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 3R00

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 34791.22

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase pim-1 A 299 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UNJ
Query on UNJ

A 5-bromo-1-benzofuran-2-carboxylic acid
C9 H5 Br O3
QKUWZCOVKRUXKX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMD
Query on IMD

A IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
UNJ IC50: 8500 - 9000 nM (100) BindingDB

IC50: 8500 nM  BindingMOAD
IC50: 8500 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.173
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.65 α = 90.00
b = 97.65 β = 90.00
c = 80.83 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-07
  • Released Date: 2011-05-11
  • Deposition author(s): Liu, J.

Revision History

  • Version 1_0: 2011-05-11

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance