3MA3

Crystal structure of human proto-oncogene serine threonine kinase (PIM1) in complex with a consensus peptide and a naphtho-difuran ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 3MA3

Classification: TRANSFERASE

Total Structure Weight: 36907.82

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase pim-1 A 313 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 92-403
Mutation: R250G
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Pimtide B 7 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
01I
Query on 01I

A naphtho[2,1-b:7,6-b']difuran-2,8-dicarboxylic acid
C16 H8 O6
IPFSIVVOJSEJOL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
01I N/A in BindingDB
IC50: 60 nM  BindingMOAD
IC50: 60 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.169
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.71 α = 90.00
b = 97.71 β = 90.00
c = 80.58 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-23
  • Released Date: 2010-04-14
  • Deposition author(s): Filippakopoulos, P., Bullock, A., Fedorov, O., Vollmar, M., von Delft, F., Cochet, C., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance