3JY0

Discovery of 3H-benzo[4,5]thieno[3,2-d]pyrimidin-4-ones as Potent, Highly Selective and Orally Bioavailable Pim Kinases Inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 3JY0

Classification: TRANSFERASE

Total Structure Weight: 34299.32

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase Pim-1 A 294 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LYG
Query on LYG

A 8-chloro-2-{[(3S)-3-hydroxypyrrolidin-1-yl]methyl}[1]benzothieno[3,2- d]pyrimidin-4(3H)-one
C15 H14 Cl N3 O2 S
DSUSQUXNJRQJMI-VIFPVBQESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LYG Ki: 5 nM (100) BindingDB

N/A in BindingMoad
Ki: 5 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.224
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 98.29 α = 90.00
b = 98.29 β = 90.00
c = 80.58 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-09-21
  • Released Date: 2009-11-10
  • Deposition author(s): Stoll, V.S.

Revision History

  • Version 1_0: 2009-11-10

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance