3EZV

CDK-2 with indazole inhibitor 9 bound at its active site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 3EZV

Classification: TRANSFERASE

Total Structure Weight: 34544.13

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division protein kinase 2 A 300 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EZV
Query on EZV

A 4-{3-[7-(4-methylpiperazin-1-yl)-1H-benzimidazol- 2-yl]-1H-indazol-6-yl}aniline
C25 H25 N7
LPSCCOBGZSKECZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
EZV N/A in BindingDB
N/A in BindingMoad
IC50: 1040 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.227
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.60 α = 90.00
b = 71.75 β = 90.00
c = 71.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-23
  • Released Date: 2009-02-03
  • Deposition author(s): Kiefer, J.R., Day, J.E., Caspers, N.L., Mathis, K.J., Kretzmer, K.K., Weinberg, R.A., Reitz, B.A., Stegeman, R.A., Trujillo, J.I., Huang, W., Thorarensen, A., Xing, L., Wrightstone, A., Christine, L., Compton, R., Li, X.

Revision History

  • Version 1_0: 2009-02-03

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance