3S83

EAL domain of phosphodiesterase PdeA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.34 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 3S83

Classification: SIGNALING PROTEIN

Total Structure Weight: 28524.16

Macromolecule Entities
Molecule Chains Length Organism Details
GGDEF family protein A 259 Caulobacter vibrioides Fragment: EAL domain residues 289-547
Gene Name(s): CC_3396
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.34 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.168
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 76.19 α = 90.00
b = 46.96 β = 96.32
c = 63.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-27
  • Released Date: 2011-06-29
  • Deposition author(s): Filippova, E.V., Minasov, G., Shuvalova, L., Kiryukhina, O., Massa, C., Schirmer, T., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2011-06-29

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2011-07-27

    Type: Structure summary

  • Version 1_3: 2016-08-31

    Type: Structure summary

  • Version 1_4: 2016-10-12

    Type: Structure summary

  • Version 1_5: 2017-11-08

    Type: Refinement description