3RF6

Crystal structure of glycerol-3 phosphate bound HAD-like phosphatase from Saccharomyces cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 3RF6

Classification: HYDROLASE

Total Structure Weight: 80161.54

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein YKR070W A, B 355 Saccharomyces cerevisiae Mutation: D19A
Gene Name(s): YKR070W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FLC
Query on FLC

A, B CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
G3P
Query on G3P

A, B SN-GLYCEROL-3-PHOSPHATE
C3 H9 O6 P
AWUCVROLDVIAJX-GSVOUGTGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.164
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 59.91 α = 90.00
b = 71.65 β = 90.00
c = 195.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-05
  • Released Date: 2011-06-01
  • Deposition author(s): Nocek, B., Kuznetsova, K., Evdokimova, E., Savchenko, A., Iakunine, A., Joachimiak, A., Mcsg, Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2011-06-01

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance