3KC2

Crystal structure of mitochondrial HAD-like phosphatase from Saccharomyces cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.169
  • R-Value Work: 0.144

Literature

Macromolecules
Sequence Display for 3KC2

Classification: HYDROLASE

Total Structure Weight: 79737.73

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein YKR070W A, B 352 Saccharomyces cerevisiae Gene Name(s): YKR070W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.169
  • R-Value Work: 0.144
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 143.73 α = 90.00
b = 67.10 β = 110.45
c = 76.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-10-20
  • Released Date: 2009-11-24
  • Deposition author(s): Nocek, B., Evdokimova, E., Kuznetsova, K., Iakunine, A., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2009-11-24

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance