3HA0
Crystal structure of the IgE-Fc3-4 domains
- PDB DOI: https://doi.org/10.2210/pdb3HA0/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Trichoplusia ni
- Mutation(s): Yes 
- Deposited: 2009-04-30 Released: 2009-09-08 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.280 
- R-Value Work: 0.241 
- R-Value Observed: 0.243 
wwPDB Validation   3D Report Full Report
This is version 2.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Ig epsilon chain C region | 223 | Homo sapiens | Mutation(s): 2  Gene Names: IGHE | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01854 (Homo sapiens) Explore P01854  Go to UniProtKB:  P01854 | |||||
PHAROS:  P01854 GTEx:  ENSG00000211891  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01854 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | G, H, I, J, K G, H, I, J, K, L | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G22768VO GlyCosmos:  G22768VO GlyGen:  G22768VO |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.280 
- R-Value Work: 0.241 
- R-Value Observed: 0.243 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 48.9 | α = 90 |
b = 104.9 | β = 96.2 |
c = 150 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
SCALEPACK | data scaling |
CNS | refinement |
DENZO | data reduction |
PDB_EXTRACT | data extraction |
MAR345 | data collection |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2009-09-08  Deposition Author(s): Wurzburg, B.A.
Revision History (Full details and data files)
- Version 1.0: 2009-09-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2021-10-13
Changes: Database references, Derived calculations, Structure summary - Version 2.2: 2023-09-06
Changes: Data collection, Refinement description