3GFV

Crystal Structure of Petrobactin-binding Protein YclQ from Bacillu subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 3GFV

Classification: TRANSPORT PROTEIN

Total Structure Weight: 67627.82

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized ABC transporter solute-binding protein yclQ A, B 303 Bacillus subtilis Fragment: residues 21-317
Gene Name(s): yclQ BSU03830
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ASN
Query on ASN

B ASPARAGINE
C4 H8 N2 O3
DCXYFEDJOCDNAF-REOHCLBHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.164
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 82.60 α = 90.00
b = 35.15 β = 91.53
c = 95.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-02-27
  • Released Date: 2009-05-12
  • Deposition author(s): Kim, Y., Maltseva, N., Zawadzka, A.M., Raymond, K.N., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2009-05-12

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-11-01

    Type: Refinement description