2R64

Crystal structure of a 3-aminoindazole compound with CDK2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 2R64

Classification: TRANSFERASE

Total Structure Weight: 34430.05

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division protein kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
740
Query on 740

A N-[5-(1,1-DIOXIDOISOTHIAZOLIDIN-2-YL)-1H- INDAZOL-3-YL]-2-(4-PIPERIDIN-1-YLPHENYL)ACETAMIDE
C23 H27 N5 O3 S
ZXYIRNXOAJYLCU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
740 IC50: 30 nM (100) BindingDB

IC50: 30 nM  BindingMOAD
IC50: 30 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.221
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.45 α = 90.00
b = 71.28 β = 90.00
c = 71.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-09-05
  • Released Date: 2008-09-09
  • Deposition author(s): Lee, J., Choi, H., Kim, K.H., Jeong, S., Park, J.W., Baek, C.S., Lee, S.H.

Revision History

  • Version 1_0: 2008-09-09

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance