2OBJ

Crystal structure of human PIM-1 Kinase in complex with inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 2OBJ

Classification: TRANSFERASE

Total Structure Weight: 38351.27

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase Pim-1 A 333 Homo sapiens EC#: 2.7.11.1 IUBMB
Mutation: S261X
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
VRV
Query on VRV

A 6-(5-BROMO-2-HYDROXYPHENYL)-2-OXO-4-PHENYL- 1,2-DIHYDROPYRIDINE-3-CARBONITRILE
C18 H11 Br N2 O2
SVSYJTYGPLVUOZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
VRV IC50: 50 nM (100) BindingDB

IC50: 50 nM  BindingMOAD
IC50: 50 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.205
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.26 α = 90.00
b = 97.26 β = 90.00
c = 80.83 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-19
  • Released Date: 2007-02-06
  • Deposition author(s): Yao, N., Cheney, I.W., Yan, S.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance