2HEW

The X-ray crystal structure of murine OX40L

• PDB DOI: https://doi.org/10.2210/pdb2HEW/pdb

• Classification: CYTOKINE
• Organism(s): Mus musculus
• Expression System: Spodoptera frugiperda
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2006-06-22 Released: 2006-08-29 
• Deposition Author(s): Hymowitz, S.G., Compaan, D.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 0.192 
• R-Value Work: 0.165 
• R-Value Observed: 0.168 

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content

• Total Structure Weight: 17.38 kDa 
• Atom Count: 1,159 
• Modelled Residue Count: 128 
• Deposited Residue Count: 152 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tumor necrosis factor ligand superfamily member 4	A [auth F]	152	Mus musculus	Mutation(s): 0  Gene Names: Tnfsf4, Ox40l, Txgp1l Membrane Entity: Yes
UniProt
Find proteins for P43488 (Mus musculus) Explore P43488  Go to UniProtKB:  P43488

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	B [auth F]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N
SO4	C [auth F]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 0.192 
• R-Value Work: 0.165 
• R-Value Observed: 0.168 
• Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.149	α = 90
b = 74.149	β = 90
c = 48.815	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
SHARP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-08-29 
Deposition Author(s): Hymowitz, S.G., Compaan, D.M.

Revision History  

• Version 1.0: 2006-08-29
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary