2FVD

Cyclin Dependent Kinase 2 (CDK2) with diaminopyrimidine inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 2FVD

Classification: TRANSFERASE

Total Structure Weight: 34417.94

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division protein kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LIA
Query on LIA

A (4-AMINO-2-{[1-(METHYLSULFONYL)PIPERIDIN- 4-YL]AMINO}PYRIMIDIN-5-YL)(2,3-DIFLUORO-6- METHOXYPHENYL)METHANONE
C18 H21 F2 N5 O4 S
JRNJNYBQQYBCLE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LIA Kd: 0.53 nM (100) BindingDB

Ki: 3 nM  BindingMOAD
Ki: 3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.207
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.51 α = 90.00
b = 71.65 β = 90.00
c = 71.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-30
  • Released Date: 2006-10-10
  • Deposition author(s): Crowther, R.L., Lukacs, C.M., Kammlott, R.U.

Revision History

  • Version 1_0: 2006-10-10

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance