2X5D

Crystal Structure of a probable aminotransferase from Pseudomonas aeruginosa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 2X5D

Classification: TRANSFERASE

Total Structure Weight: 186278.97

Macromolecule Entities
Molecule Chains Length Organism Details
PROBABLE AMINOTRANSFERASE A, B, C, D 412 Pseudomonas aeruginosa Gene Name(s): PA4715
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, D PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.216
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 66.86 α = 90.00
b = 173.81 β = 114.51
c = 76.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-02-08
  • Released Date: 2010-07-21
  • Deposition author(s): Oke, M., Carter, L.G., Johnson, K.A., Liu, H., Mcmahon, S.A., White, M.F., Naismith, J.H.

Revision History

  • Version 1_0: 2010-07-21

    Type: Initial release

  • Version 1_1: 2013-07-17

    Type: Atomic model, Derived calculations, Non-polymer description, Other, Refinement description, Version format compliance