2J0B

Structure of the catalytic domain of mouse Manic Fringe in complex with UDP and manganese


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.180 

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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Structural Insights Into the Notch-Modifying Glycosyltransferase Fringe

Jinek, M.Chen, Y.-W.Clausen, H.Cohen, S.M.Conti, E.

(2006) Nat Struct Mol Biol 13: 945

  • DOI: https://doi.org/10.1038/nsmb1144
  • Primary Citation of Related Structures:  
    2J0A, 2J0B

  • PubMed Abstract: 

    Fringe proteins are beta1,3-N-acetylglucosaminyltransferases that modify Notch receptors, altering their ligand-binding specificity to regulate Notch signaling in development. We present the crystal structure of mouse Manic Fringe bound to UDP and manganese. The structure reveals amino acid residues involved in recognition of donor substrates and catalysis, and a putative binding pocket for acceptor substrates. Mutations of several invariant residues in this pocket impair Fringe activity in vivo.


  • Organizational Affiliation

    European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117 Heidelberg, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE MANIC FRINGE280Mus musculusMutation(s): 1 
EC: 2.4.1.222
UniProt & NIH Common Fund Data Resources
Find proteins for O09008 (Mus musculus)
Explore O09008 
Go to UniProtKB:  O09008
IMPC:  MGI:1095404
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO09008
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.180 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 161.76α = 90
b = 40.97β = 90
c = 38.37γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-09-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2019-10-16
    Changes: Data collection, Experimental preparation, Other