2HYK

The crystal structure of an endo-beta-1,3-glucanase from alkaliphilic Nocardiopsis sp.strain F96


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.162
  • R-Value Work: 0.143

Literature

Macromolecules
Sequence Display for 2HYK

Classification: HYDROLASE

Total Structure Weight: 27631.96

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-1,3-glucanase A 245 Nocardiopsis sp. f96 EC#: 3.2.1.39 IUBMB
Gene Name(s): bglF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EOH
Query on EOH

A ETHANOL
C2 H6 O
LFQSCWFLJHTTHZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.162
  • R-Value Work: 0.143
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 34.59 α = 90.00
b = 71.84 β = 90.21
c = 39.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-08-07
  • Released Date: 2007-10-02
  • Deposition author(s): Fibriansah, G., Nakamura, S., Kumasaka, T.

Revision History

  • Version 1_0: 2007-10-02

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Source and taxonomy, Version format compliance

  • Version 1_2: 2017-10-18

    Type: Refinement description