2G7M

Crystal structure of B. fragilis N-succinylornithine transcarbamylase P90E mutant complexed with carbamoyl phosphate and N-acetylnorvaline


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 2G7M

Classification: TRANSFERASE

Total Structure Weight: 233965.63

Macromolecule Entities
Molecule Chains Length Organism Details
putative ornithine carbamoyltransferase C, D, E..., X, Y, ZC, D, E, X, Y, Z 338 Bacteroides fragilis EC#: 2.1.3 IUBMB
Mutation: P90E, T242L
Gene Name(s): BF0494
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AN0
Query on AN0

C, D, E, X, Y, Z N-ACETYL-L-NORVALINE
C7 H13 N O3
BSYFPUSAWVWWDG-LURJTMIESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CP
Query on CP

C, D, E, X, Y, Z PHOSPHORIC ACID MONO(FORMAMIDE)ESTER
C H4 N O5 P
FFQKYPRQEYGKAF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

D, Y SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.218
  • Space Group: P 43

Unit Cell:

Length (Å) Angle (°)
a = 156.65 α = 90.00
b = 156.65 β = 90.00
c = 120.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-28
  • Released Date: 2007-03-06
  • Deposition author(s): Shi, D., Yu, X., Roth, L., Morizono, H., Allewell, N.M., Tuchman, M.

Revision History

  • Version 1_0: 2007-03-06

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description