2FJG

Structure of the G6 Fab, a phage derived Fab fragment, in complex with VEGF


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 2FJG

Classification: HORMONE / GROWTH FACTOR / IMMUNE SYSTEM

Total Structure Weight: 119405.57

Macromolecule Entities
Molecule Chains Length Organism Details
Vascular endothelial growth factor A V, W 102 Homo sapiens Fragment: Receptor binding domain (residues 34-135)
Gene Name(s): VEGFA Gene View VEGF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fab light chain A, L 214 Homo sapiens
Fab heavy chain B, H 227 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B, H SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.199
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 117.88 α = 90.00
b = 117.88 β = 90.00
c = 212.56 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-02
  • Released Date: 2006-02-07
  • Deposition author(s): Wiesmann, C.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Version format compliance