2FG7

N-succinyl-L-ornithine transcarbamylase from B. fragilis complexed with carbamoyl phosphate and N-succinyl-L-norvaline


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 2FG7

Classification: TRANSFERASE

Total Structure Weight: 234121.86

Macromolecule Entities
Molecule Chains Length Organism Details
putative ornithine carbamoyltransferase C, D, E..., X, Y, ZC, D, E, X, Y, Z 338 Bacteroides fragilis EC#: 2.1.3 IUBMB
Mutation: T242L
Gene Name(s): BF9343_0422
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SN0
Query on SN0

C, D, E, X, Y, Z N-(3-CARBOXYPROPANOYL)-L-NORVALINE
C9 H15 N O5
HRAPDLBXHOBAKA-LURJTMIESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CP
Query on CP

C, D, E, X, Y, Z PHOSPHORIC ACID MONO(FORMAMIDE)ESTER
C H4 N O5 P
FFQKYPRQEYGKAF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

C, X SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.204
  • Space Group: P 43

Unit Cell:

Length (Å) Angle (°)
a = 156.42 α = 90.00
b = 156.42 β = 90.00
c = 120.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-21
  • Released Date: 2006-05-23
  • Deposition author(s): Shi, D., Yu, X., Malamy, M.H., Allewell, N.M., Tuchman, M.

Revision History

  • Version 1_0: 2006-05-23

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Source and taxonomy, Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description