2CCG

Crystal structure of His-tagged S. aureus thymidylate kinase complexed with thymidine monophosphate (TMP)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 2CCG

Classification: TRANSFERASE

Total Structure Weight: 51896.32

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDYLATE KINASE A, B 225 Staphylococcus aureus EC#: 2.7.4.9 IUBMB
Details: N-TERMINAL HIS-TAGGED
Gene Name(s): tmk SAV0482
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TMP
Query on TMP

A, B THYMIDINE-5'-PHOSPHATE
C10 H15 N2 O8 P
GYOZYWVXFNDGLU-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.200
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 54.54 α = 90.00
b = 51.27 β = 103.63
c = 72.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-16
  • Released Date: 2006-03-08
  • Deposition author(s): Kotaka, M., Dhaliwal, B., Ren, J., Nichols, C.E., Angell, R., Lockyer, M., Hawkins, A.R., Stammers, D.K.

Revision History

  • Version 1_0: 2006-03-08

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance