1X5Z

Solution structure of the fibronectin type-III domain of human protein tyrosine phosphatase, receptor type, D isoform 4 variant

• PDB DOI: https://doi.org/10.2210/pdb1X5Z/pdb
• BMRB: 11292

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2005-05-17 Released: 2005-11-17 
• Deposition Author(s): Yoneyama, M., Saito, K., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the lowest energy,structures with the least restraint violations 

Literature

Solution structure of the fibronectin type-III domain of human protein tyrosine phosphatase, receptor type, D isoform 4 variant

Yoneyama, M., Saito, K., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 12.27 kDa 
• Atom Count: 863 
• Modelled Residue Count: 115 
• Deposited Residue Count: 115 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Receptor-type tyrosine-protein phosphatase delta	A	115	Homo sapiens	Mutation(s): 0  Gene Names: PTPRD EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for P23468 (Homo sapiens) Explore P23468  Go to UniProtKB:  P23468
PHAROS:  P23468 GTEx:  ENSG00000153707

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the lowest energy,structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-11-17 
Deposition Author(s): Yoneyama, M., Saito, K., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-11-17
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Data collection, Database references, Derived calculations