1ZTJ

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 2-(5-Benzylamino-2-methylsulfanyl-6-oxo-6H-pyrimidin-1-yl)-N-[4-guanidino-1-(thiazole-2-carbonyl)-butyl]-acetamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 1ZTJ

Classification: HYDROLASE

Total Structure Weight: 27534.16

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation factor XI A 238 Homo sapiens EC#: 3.4.21.27 IUBMB
Fragment: Catalytic Domain
Mutation: S75A, K78A, T115A, C123S
Gene Name(s): F11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
632
Query on 632

A 2-(5-BENZYLAMINO-2-METHYLSULFANYL-6-OXO-6H- PYRIMIDIN-1-YL)-N-[4-GUANIDINO-1-(THIAZOLE- 2-CARBONYL)-BUTYL]-ACETAMIDE
C23 H28 N8 O3 S2
NSVPIISNZVMCCY-INIZCTEOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BCT
Query on BCT

A BICARBONATE ION
C H O3
BVKZGUZCCUSVTD-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.200
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 120.67 α = 90.00
b = 120.67 β = 90.00
c = 120.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-27
  • Released Date: 2006-05-09
  • Deposition author(s): Nagafuji, P., Jin, L., Rynkiewicz, M., Quinn, J., Bibbins, F., Meyers, H., Babine, R.E., Strickler, J.E., Abdel-Meguid, S.S.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance