1ZMJ

Crystal Structure of the Catalytic Domain of Factor XI in complex with 4-(guanidinomethyl)-phenylboronic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1ZMJ

Classification: HYDROLASE

Total Structure Weight: 27315.71

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation factor XI A 238 Homo sapiens EC#: 3.4.21.27 IUBMB
Fragment: Catalytic Domain
Mutation: S75A, K78A, T115A, C123S
Gene Name(s): F11 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HDB
Query on HDB

A (R)-1-(4-(4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN- 2-YL)BENZYL)GUANIDINE
C11 H16 B N3 O3
IIZOWFNBOXPJES-SNVBAGLBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.201
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 120.78 α = 90.00
b = 120.78 β = 90.00
c = 120.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-10
  • Released Date: 2006-05-09
  • Deposition author(s): Lazarova, T.I., Jin, L., Rynkiewicz, M.J., Gorga, J.C., Bibbins, F., Meyers, H.V., Babine, R.E., Strickler, J.E.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance