1YVH

Crystal Structure of the c-Cbl TKB Domain in Complex with the APS pTyr-618 Phosphopeptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1YVH

Classification: LIGASE SIGNALING PROTEIN IMMUNE SYSTEM

Total Structure Weight: 39859.06

Macromolecule Entities
Molecule Chains Length Organism Details
CBL E3 ubiquitin protein ligase A 329 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: Tyrosine kinase binding domain, residues 25-351
Gene Name(s): CBL Gene View CBL2 RNF55
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
13-mer fragment of SH2 and PH domain-containing adapter protein APS B 13 Rattus norvegicus Fragment: pTyr-618 phosphopeptide
Mutation: Y10X
Gene Name(s): Sh2b2 Aps
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
B L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.209
  • Space Group: P 6

Unit Cell:

Length (Å) Angle (°)
a = 122.26 α = 90.00
b = 122.26 β = 90.00
c = 55.13 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-15
  • Released Date: 2005-03-08
  • Deposition author(s): Hu, J., Hubbard, S.R.

Revision History

  • Version 1_0: 2005-03-08

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance