1VEC

Crystal structure of the N-terminal domain of rck/p54, a human DEAD-box protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1VEC

Classification: RNA BINDING PROTEIN

Total Structure Weight: 46441.65

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent RNA helicase p54 A, B 206 Homo sapiens EC#: 3.6.4.13 IUBMB
Fragment: N-TERMINAL DOMAIN
Gene Name(s): DDX6 Gene View HLR2 RCK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TLA
Query on TLA

B L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.198
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.52 α = 90.00
b = 73.14 β = 90.00
c = 84.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-29
  • Released Date: 2004-04-13
  • Deposition author(s): Hogetsu, K., Matsui, T., Yukihiro, Y., Tanaka, M., Sato, T., Kumasaka, T., Tanaka, N.

Revision History

  • Version 1_0: 2004-04-13

    Type: Initial release

  • Version 1_1: 2008-04-21

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-04

    Type: Refinement description