1HHA
Decaplanin first P6122-Form
- PDB DOI: https://doi.org/10.2210/pdb1HHA/pdb
- Classification: ANTIBIOTIC
- Organism(s): uncultured actinomycete
- Mutation(s): No 
- Deposited: 2000-12-22 Released: 2005-07-11 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.265 
- R-Value Observed: 0.215 
wwPDB Validation   3D Report Full Report
This is version 3.0 of the entry. See complete history. 
Macromolecules
Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ERE Query on ERE | I [auth A], J [auth B], L [auth C], M [auth D] | 4-epi-vancosamine C7 H15 N O3 OIJZDPGKNVKVBL-VZFHVOOUSA-N | |||
GOL Query on GOL | K [auth B], N [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
OMX Query on OMX | A, B, C, D | L-PEPTIDE LINKING | C9 H11 N O4 | TYR |
Biologically Interesting Molecules (External Reference) 2 Unique
Entity ID: 1 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000207 Query on PRD_000207 | A, B, C, D | Decaplanin | Glycopeptide / Antibiotic |
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000207 Query on PRD_000207 | E, F, G, H | Decaplanin | Glycopeptide / Antibiotic |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.265 
- R-Value Observed: 0.215 
- Space Group: P 61 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 64.364 | α = 90 |
b = 64.364 | β = 90 |
c = 84.128 | γ = 120 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
SHELX | phasing |
DM | phasing |
SHELXL-97 | refinement |
Entry History 
Deposition Data
- Released Date: 2005-07-11  Deposition Author(s): Lehmann, C., Vertessy, L., Sheldrick, G.M., Dauter, Z., Dauter, M.
Revision History (Full details and data files)
- Version 1.0: 2005-07-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Atomic model, Database references, Derived calculations, Structure summary, Version format compliance - Version 1.2: 2012-07-11
Changes: Other - Version 1.3: 2012-11-30
Changes: Other - Version 1.4: 2013-05-01
Changes: Non-polymer description - Version 2.0: 2019-04-24
Changes: Data collection, Derived calculations, Other, Polymer sequence - Version 3.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary