5JKE

Crystal structure of human IZUMO1-JUNO complex (crystal form 3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.86 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 5JKE

Classification: CELL ADHESION

Total Structure Weight: 108332.20

Macromolecule Entities
Molecule Chains Length Organism Details
Izumo sperm-egg fusion protein 1 A, C 246 Homo sapiens Fragment: UNP residues 20-255
Gene Name(s): IZUMO1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Sperm-egg fusion protein Juno B, D 221 Homo sapiens Fragment: UNP residues 20-228
Gene Name(s): IZUMO1R Gene View FOLR4 JUNO
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.86 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.203
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 64.18 α = 90.00
b = 141.78 β = 90.00
c = 144.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-26
  • Released Date: 2016-06-22
  • Deposition author(s): Ohto, U., Ishida, H., Shimizu, T.

Revision History

  • Version 1_0: 2016-06-22

    Type: Initial release

  • Version 1_1: 2016-06-29

    Type: Database references